Replica Exchange Improves Sampling in Low-Resolution Docking Stage of RosettaDock
نویسندگان
چکیده
منابع مشابه
Replica Exchange Improves Sampling in Low-Resolution Docking Stage of RosettaDock
Many protein-protein docking protocols are based on a shotgun approach, in which thousands of independent random-start trajectories minimize the rigid-body degrees of freedom. Another strategy is enumerative sampling as used in ZDOCK. Here, we introduce an alternative strategy, ReplicaDock, using a small number of long trajectories of temperature replica exchange. We compare replica exchange sa...
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ژورنال
عنوان ژورنال: PLoS ONE
سال: 2013
ISSN: 1932-6203
DOI: 10.1371/journal.pone.0072096